@prefix dc: <http://purl.org/dc/terms/> .
@prefix ore: <http://www.openarchives.org/ore/terms/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix ro: <http://purl.org/wf4ever/ro#> .
@prefix wfprov: <http://purl.org/wf4ever/wfprov#> .
@prefix wfdesc: <http://purl.org/wf4ever/wfdesc#> .
@prefix opt: <http://purl.org/net/RO-optimization#> .
@prefix xhv: <http://www.w3.org/1999/xhtml/vocab#> .
@prefix : <http://purl.org/net/svm-opt-research-object#> .
@base <http://purl.org/net/svm-opt-research-object#>.

<> dc:creator <http://delicias.dia.fi.upm.es/members/DGarijo/#me>;
	prov:wasAttributedTo <http://delicias.dia.fi.upm.es/members/DGarijo/#me> .

<http://purl.org/net/svm-opt-research-object> a opt:OptimizationResearchObject, ro:ResearchObject, ore:Aggregation;
	dc:contributor <http://delicias.dia.fi.upm.es/members/DGarijo/#me>,<http://semanticweb.org/wiki/Khalid_Belhajjame>;
    dc:creator <http://www.fz-juelich.de/SharedDocs/Personen/IAS/JSC/EN/staff/holl_s.html?nn=361682>;
    dc:title "ENM Workflow parameter optimization using SVM"@en;
    ore:aggregates <http://www.myexperiment.org/workflows/3680.html>,:select_algorithm,:run1, :run2, :run3, :run4, :run5, :run6, :run7, :run8, :run9, :run10, :searchSpace, :algorithm, :fitness, :condition;
    ore:isDescribedBy <>;
    xhv:license <http://creativecommons.org/licenses/by-nc-sa/2.0/>;
	opt:hasWorkflow <http://www.myexperiment.org/workflows/3680.html>;
	opt:hasSubWorkflow :select_algorithm;
	opt:hasOptimizationRun :run1, :run2, :run3, :run4, :run5, :run6, :run7, :run8, :run9, :run10;
	opt:hasSearchSpace :searchSpace;
	opt:hasAlgorithm :algorithm;
	opt:hasFitness :fitness;
	opt:hasTerminationCondition :condition;
    prov:wasAttributedTo <http://delicias.dia.fi.upm.es/members/DGarijo/#me>, <http://www.fz-juelich.de/SharedDocs/Personen/IAS/JSC/EN/staff/holl_s.html?nn=361682>.
	
<http://www.myexperiment.org/workflows/3680.html> a wfdesc:Workflow;
	dc:title "ENM SVM workflow used for optimization";
	dc:description "This workflow was used for the optimization of the SVM algorithm from the openModeller toolbox (http://openmodeller.sourceforge.net). The workflow creates a model with 90% of the data and tests this model with the remaining 10%. Finally, it calculates the area under the curve, which was used as fitness function during the optimization process.";
	wfdesc:hasSubWorkflow :select_algorithm, :parse_input_points, :select_layers, :allocate_points, :create_and_test_model, :extract_aucs, :calculate_mean. 

:select_algorithm a wfdesc:Workflow.

<http://www.myexperiment.org/workflows/3680.html> a wfdesc:Workflow;
	wfdesc:hasInput :gamma, :cost, :pseudo, :nu, :coef0,:degree, :kernel, :svm, :prob, :mask;
	wfdesc:hasOutput :auc.

:searchSpace a opt:SearchSpace;
	opt:hasProcessor :select_algorithm;
	opt:hasInputParameter :gamma, :cost, :pseudo.
							 
:gamma a opt:DoubleInputParameter;
	opt:hasName "gamma";
    opt:hasMinValue "0";
	opt:hasMaxValue "10";
	opt:hasRoundValue "true".

:cost a opt:IntegerInputParameter;
	opt:hasName "cost";
	opt:hasMinValue "0";
	opt:hasMaxValue "8";
	opt:hasNumericFunction [a opt:ExponentialFunction;
		opt:hasFunctionValue 2.].

:pseudo a opt:IntegerInputParameter;
	opt:hasName "numberOfPseudoAbsences";
	opt:hasMinValue "200";
	opt:hasMaxValue "600".
	
:nu a wfdesc:Parameter;
	opt:hasName "Nu";
	opt:hasValue "0.5".
	
:coef0 a wfdesc:Parameter;
	opt:hasName "Coef0";
	opt:hasValue "0".
	
:degree a wfdesc:Parameter;
	opt:hasName "Degree";
	opt:hasValue "3".
	
:kernel a wfdesc:Parameter;
	opt:hasName "Kernel_Type";
	opt:hasValue "2".
	
:svm  a wfdesc:Parameter;
	opt:hasName "SVM_Type";
	opt:hasValue "0".
	
:prob a wfdesc:Parameter;
	opt:hasName "ProbabilisticOutput";
	opt:hasValue "1".
	
:mask a wfdesc:Parameter;
	opt:hasName "Mask";
	opt:hasValue "wcs>http://biovel.iais.fraunhofer.de/geoserver/ows?>biovel_temp:SJB_Baltic_NorthEastAtlantic_20130522_112604_531".
							 
:condition a opt:TerminationCondition;
		   opt:hadMaxTime "1440min".
		   
:algorithm a opt:GeneticAlgorithm;
		   opt:hasAlgortihmParameter [a opt:AlgorithmParameter;
			    opt:hasParameterValue "CO=0.75";
			    opt:hasParameterValue "MR=0.2".
			].
							
:fitness a opt:SingleObjectiveFitness;
		 opt:hasFitnessFunction [a opt:FitnessFunction;
			opt:hasFunctionOutputParameter :auc.
		 ].
							
:auc a opt:DoubleInputParameter, wfdesc:Parameter.

:run1 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.9207";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "2.36";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "8";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "363";
			wfprov:describedByParameter :pseudo.
		].
		
:run2 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.9014";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "5.87";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "64";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "458";
			wfprov:describedByParameter :pseudo.
		].

:run3 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.8974";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "6.84";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "8";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "319";
			wfprov:describedByParameter :pseudo.
		].

:run4 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.9019";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "3.79";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "32";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "486";
			wfprov:describedByParameter :pseudo.
		].
		
:run5 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.9032";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "8.94";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "256";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "568";
			wfprov:describedByParameter :pseudo.
		].
		
:run6 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.9084";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "0.06";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "32";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "215";
			wfprov:describedByParameter :pseudo.
		].
		
:run7 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.8867";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "4.78";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "8";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "491";
			wfprov:describedByParameter :pseudo.
		].
		
:run8 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.9102";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "1.25";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "8";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "562";
			wfprov:describedByParameter :pseudo.
		].
		
:run9 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.8929";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "6.09";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "64";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "514";
			wfprov:describedByParameter :pseudo.
		].
		
:run10 a opt:OptimizationRun;
	  opt:hasFlag [a opt:Original.];
	  opt:hasFitnessValue "0.9101";
	  wfprov:usedInput [a opt:Artifact;
			opt:hasValue "2.24";
			wfprov:describedByParameter :gamma.
		],
		[a opt:Artifact;
			opt:hasValue "4";
			wfprov:describedByParameter :cost.
		],
		[a opt:Artifact;
			opt:hasValue "453";
			wfprov:describedByParameter :pseudo.
		].